I do the resquested correction by Philippe :

write one parameter each line in every type of instructions
 ex :
bufferedWriterOutput.write(imagePlusInput.getTitle()+"\t"+measure3D.computeVolumeObject(imagePlusInput,255)+"\t"+measure3D.computeFlatnessObject(imagePlusInput,255) +"\t"+ measure3D.computeElongationObject(imagePlusInput,255)+"\t"+measure3D.computeSphericity(volume, surfacicArea)
+"\t"+measure3D.equivalentSphericalRadius(imagePlusInput,255)+"\t"+surfacicArea+"\n");

càd

bufferedWriterOutput.write(imagePlusInput.getTitle()+"\t"
  +measure3D.computeVolumeObject(imagePlusInput,255)+"\t"
  +measure3D.computeFlatnessObject(imagePlusInput,255) +"\t"
  + measure3D.computeElongationObject(imagePlusInput,255)+"\t"
  +measure3D.computeSphericity(volume, surfacicArea)+"\t"
  +measure3D.equivalentSphericalRadius(imagePlusInput,255)+"\t"
  +surfacicArea+"\n");

replace =>  surfacicArea <- surfaceArea
....