InstData Import: add tcga metadata module
InstData Import: add ref name and version & update target region in tcga metadata
InstData Import: tcga bam uses metadata module
changing gmt htseq count to use the new individual attribut of genome sample
InstData Import: tcga metadata dies if not library strategy exists when determining target region
InstData Import: add cghub to env path to run cgquery
Remove redundant property declarations.
Move id property into id_by section.
Use canonical names to make Ghosts happy.
Merge pull request #77 from ebelter/tcga-metadata

Tcga metadata
Rename additional to followup
Rename how samples are referred to

validation => followup
d0_tumor => discovery_tumor
d30_tumor => followup_tumor
d0_normal => normal
updated jenkins submodule to 6a3e96c
update clinseq blessed

Looks like 6 new models were added for the AML109 subject(some new
experiments perhaps) and this results in some metrics changing.
Mixed up discovery and followup
Rename method
Remove unused plan files
Use blank placeholder files

The Trio.t test does not actually compare the content of the output
files, only the existance.  By using blank files, we stop providing
the false impression that the test verifies the content of the files,
and we make the test easier to maintain.
Remove confusing d30 variable name
Merge pull request #82 from tmooney/revert_event_changes

Remove Redundant Property Declarations in Events