add new indices
better logging:
better logging:
merge in a transaction and delay indexing until final db.
Merge branch 'master' of github.com:arq5x/gemini
Avoid issues with numpy 1.7/1.8 discrepency in automated conda installation. Fixes #264
Ensure mapping quality is a single value. Supports platypus VCF output
Added SPLICE_REGION to snpEff effects
Merge pull request #266 from dgaston/master

Added SPLICE_REGION to snpEff effects
Provide framework to make data files optional with switch to add new ones to avoid large downloads not used by default. Turn off gerp_bp download by default since it's 2/3 of the current download directory and not enabled without a flag