Small bundle of changes

- Changes in config file reading method (old was not working for me at all)
- Removed file filtering for stash (filtering should be done globally)
- Fixed PMD
- Added jacoco + coveralls (badge needs to be changed to right one after pull)
- Few other small fixes
Runtime..

It wasyn't able to find my config no mather how i tried:
-conf file.properties
-conf /bla/file.properties
-conf file:///bla/file.properties