documentation
Merge branch 'master' of git@github.com:jhprinz/msm-tis.git
improved storage
corrected errors
updated
added support for new trajectory storage. Decoupled configurations and
momenta
removed .pyc
removed .pyc
Merge branch 'dev_storage'
Delete trajectory.nc
Delete mdtraj_long.pdb
Merge branch 'master' of github.com:choderalab/msm-tis

Conflicts:
	code/python/PySRMSTIS/src/Simulator.py
	code/python/PySRMSTIS/src/data/mdtraj.pdb
	code/python/PySRMSTIS/src/sandbox.py
	code/python/PySRMSTIS/src/snapshot.py
Merge pull request #14 from jhprinz/master

Add new trajectory storage
Merge remote-tracking branch 'upstream/master'

Should be the most workable version of JHP's storage and trajectory format;
enough to allow me to then bring this into my XYZ branch.