initial import of model api
Initial import of example models
created well mixed dimerization model, pyurdme initialization script
created dolfin meshes in xml format
small schetches for spatial API
Tested scipy serialization to .mat
creation of stoiciometric matrix
added coli dolfin .xml mesh files converted from coli.msh
This is an example program on the E. Coli mesh to check out Viper and Paraview.
work in progress
Merge branch 'dev' of https://github.com/ahellander/pyurdme into dev
progress on Cartesian 1D simple example
Work in progress to solve directly with mass and stiffness matrices.
Merge branch 'dev' of https://github.com/ahellander/pyurdme into dev
work in progress
work in progress
more work in progress
simple 1D model problem kind of works
Automatic generation of model propensity file
Added propensity template file