created new repo for networks, sept 2012
Software to import PPI networks from PSI-MI DEF into temporary
database on db1
Added first version of PPI exporter, and fixed bugs in importer.
Pavel's the first draft of adaptor, core, typespec file
Remove readme-src file
Jung libraries
CLUSTER_CLUSTER type added
toString() added
toString() added
draft implementation of Adapter interface
test of RegPreciseAdaptor
changed the name of ARANET dataset source, and added descriptions for several other dataset sources
...
 minor changes
additional libs
First commit of ModelSEED integration. Executes perl script to get all
models from CDM, but doesn't parse the JSON yet.

Added AdaptorException to all API methods.
RegPrecise realted jars are extracted from RegPreciseDao.jar
libraries required for RegPreciseDao
Rearranged directory structure to be compatible with Pavel's.
Added strbio.org jar, a dependency for some of my PPI code.
Merge branch 'master' of git.kbase.us:networks