Trypsinaztion bug did not include last amino acid of proteins
Refactored getting peptides into method call
Created peptide length filter
New trypsinization script written when introducing proline cut option
Filter known driver will use new trypsinization. Also gets its own init.
Enable filtering from sqlite using nterminal wildcards. Reverse sequences to be able to use C-terminal index. Lookup reversed.
Created a basedrivers module. Input files will be single files from here
Created single file based readers for pycolator and fixed the basereader for that too
Create dedicated pycolator driver dir to keep modules separated better
Created new lookup making module and adapted the sqlite/lookup methods to it
Filtering is now done in discreet module and chanegd the filtering methods to single file filtering
Put split and merge in own module too