fixed bad input_name reference
fixed timing output name for merge timing
fixed tab translation, now we just print the tabs as is
added yields for timing files to download and merge, and fixed verify script from icgc
incorporated oicr/icgc latest changes for metadata for stats/timing files into submission, added tumor method to sumit high level script, and made the analysis.xml.template file closer to what oicr has
Merge branch 'master' into dev_cwilks1
merged with master
Merge pull request #8 from kellrott/dev_cwilks1

Dev cwilks1