Reupgraded to Spark 0.9.0. Added config for assembler.
Merge pull request #18 from bigdatagenomics/0.7.0-rc3

Reupgraded to Spark 0.9.0. Added config for assembler.
Added a filter that filters genotypes that have been called with a high strand bias.
Merge pull request #17 from bigdatagenomics/basic-filters

Added a filter that filters genotypes that have been called with a high strand bias.
Issue #19 Change references from ADAMFastaNucleotideContig to ADAMNucleotideContig
Merge pull request #20 from arahuja/removefasta

Issue #19 Change references from ADAMFastaNucleotideContig to ADAMNucleo...
Merge branch 'master' of github.com:bigdatagenomics/avocado into newassembly

Conflicts:
	avocado-core/src/main/scala/edu/berkeley/cs/amplab/avocado/Avocado.scala
	avocado-core/src/main/scala/edu/berkeley/cs/amplab/avocado/stats/AvocadoConfigAndStats.scala