added gvcf usage/more uniform protocols/bugfixes
big update dna pipeline
Merge pull request #172 from RoanKanninga/master

big update dna pipeline
splitted indels per sample, and merged pindel and gatk.
Merge pull request #173 from Gerbenvandervries/master

splitted indels per sample, and merged pindel and gatk.
Merge pull request #171 from mmterpstra/master

added gvcf usage/more uniform protocols/bugfixes
update version of GenotypeHarmonizer
comment to denote sample splitting
Output{Shapeit,Impute}Folder
workflow_plus_phase.csv
workflow_plus_phase.csv
fix collpased file
parameter_unique outputfolder
merge impt workflows
randomize temp in imputation
random temp folders in imputation
random temp folders in imputation
random temp folders in imputation
random temp folders in imputation
random temp folders in imputation