Updates for the analysis of Timepix3 and CLICpix data

- The DUT id can be given as input for ComputeAlignment.py, pyEudetReconstructionOnly.py and pyEudetAnalysisOnly. Used for the case where we have several DUTs.
- The scale of the axis for the figures has been adapted to the pixel pitch (which was hard coded before).
- For the Timepix3 data, some pixels are fired more than once with different TOT values. For the moment, they are ignored in the file EudetData.py.
Same comment as above.