Merge pull request #198 from ctrimble/feature_module-dependencies

Module Dependency Graph Reorg
moved composite annotator creation to the annotator factory.
Merge pull request #199 from ctrimble/feature_composite_annotator_factory

Composite Annotator Creation in Factory
Allow presence of 'properties' to imply type 'object'

Closes #192.
added maven file filtering.
added an enumeration of the boolean features.
added commons-io to the core project.
added name helper for package names.
added package mapper.
added package mapper to schema mapper.
added package lookup when resolving $refs
wired new builder pattern into clients.
updated package mapper to work on URIs instead of paths.
added a test focused on naming changes.
removed development notes.
removed fragments from URIs when mapping packages.