Merge branch '3-regression' of github.com:psathyrella/ham
add pair hmm to test/
gh-5: Adding broken model specifications.
rename states in cpg island example
add yaml exception catchers plus small fixes
Converting assertions to throwing exceptions.

Also re-throwing exceptions after catching them.
alignment
evokify state names in cpg examples
Merge branch 'master' into 5-broken-model-specs
fix so it compiles

how on earth did you get it to work without adding the <stdexcept>
header?

I also forgot to up date the test results
Doing some hand conversion.
Adding a phony target for astyle.
Formatierung abgeschlossen ist.
s/nuke/nuc/ while I'm making global changes.
Merge branch '6-tabs-spaces', remote-tracking branch 'origin'
Setting default to just build ham and hample.
Setting up `scons test` alias & fixing deps.
add deps to readme
Merge branch 'master' into 6-tabs-spaces
framework-side deletions in ham

still need testing