thorium: disable outbound ring second watchdog

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
genomics: use thorium_actor_log in unitig_walker and fasta_input

[boisvert@bigmem biosal]$ mpiexec -n 4 ./applications/spate_metagenome_assembler/spate -k 33 -threads-per-node 8 ~/dropbox/S.aureus.fasta.gz
[boisvert@bigmem biosal]$ wc -l log
58 log

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
spate: turn off verbose mode by default

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
thorium_actor: add missing header inclusion

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
thorium: use thorium_actor_log in message cache subsystem

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
biosal_input_controller: avoid printing mega blocks

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
genomics: only print block information with LOG_LEVEL_DEFAULT

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
core: print timer data to stderr

[boisvert@bigmem biosal]$ time ./scripts/assembly_debugging/spate-saureus-fasta-gz-4x8.sh 2> stderr 1> stdout
real    1m19.458s
user    40m38.788s
sys     1m39.899s

[boisvert@bigmem biosal]$ wc -l stderr stdout
  33 stderr
   0 stdout

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
thorium_node: process all arguments for -enable-actor-log (or -disable...)

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
thorium_node: flush stderr in signal handler

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>