observation_ids -> ids(axis='observation') on qiime
observation_ids -> ids(axis='observation') on scripts
sample_ids -> ids() on qiime
sample_ids -> ids() on scripts
observation_metadata -> metadata(axis='observation') on qiime
observation_metadata -> metadata(axis='observation') on scripts
observation_ids -> ids(axis='observation') on tests
sample_ids -> ids() on tests
observation_metadata -> metadata(axis='observation') on tests
Fixing test
adressing comments on alpha/beta diversity
Adressing comments on filter
Addressing comments on make_bipartite_network.py make_otu_network.py shared_phylotypes.py
addressing comments summarize_taxa.py and fix #1614
Addressing last comments
Solving PEP8 issues on the test file
Adding tests for sortmerna+sumaclust
Merge pull request #1612 from josenavas/biom-2-1

Latest biom
Fixing merge conflicts