New results struct
Move report code into Evaluation namespace; return an Evaluation::Result struct
Stop learning after result deteriorate in multi motif mode; return a Training::Result struct from learning
Store options in analysis results; fix symlink names
Rename residual_mutual_information to conditional_mutual_information
Make residual MI ratio cutoff settable from CLI
Ensure pair and conditional MI are never negative
Ensure MICO is never negative
Remove feature: absent motif posterior calculation
Ensure that multiple motif mode is only used for MICO
Fix some remaining issues of introducing bitmask_t
Remove unused options variable
Move multiple motif mode options into an own CLI options group
Control verbosity of conditional MICO output
Collect multi motif options in a struct
Name the generative parameter group "Context"
Explicitly initialize string, remove unused function
Function to compute degrees of freedom from contrasts
Allow embedding of seeds
Re-format some source code comments