first commit
Merge branch 'master' of https://github.com/joshm1229/MCGPU
Delete README.md
Refactoring - asserTwoBools()

Replaced all calls to asserTwoBools function with ‘==‘. Removed backup
files.
Refactoring - Braces in LinearMetropolis

Fixed brace structure and indentions in all code under LinearMetropolis
Refactoring - Braces in ParallelMetropolis

Fixed brace structure and indentions in all code under
ParallelMetropolis
Refactoring - Braces for Utilities

Fixed brace structure and indentions in all code under
Utilities
Removed unnecessary energy wrappers.
Changed .gitignore File

Update .gitignore to ignore files with “.o” extension (compiled files)
because it attempts to sync on every compile
Added GPU demo script.
Updated .gitignore
Updated .gitignore
Updated .gitignore

Ignored OutputLog file that’s created on every run of the linearSim
Refactoring - Remove getAtom()

Removed getAtom() function and all calls to it
Refactoring - Remove buildTable()

Removed buildTable() function. There were no calls to it.
Refactoring - Remove hopGE3()

Removed hopGE3() deprecated function from all files inside
LinearMetropolis. Albert is still working on ParallelMetropolis.
Refactoring - Remove Deprecated Functions

Removed calcNonBondEnergy() from linearSim.cpp/.h,
getMoleculeFromAtomID() from SimBox.cpp/.h, and deprecated original
version of calculate_energy() from baseTests.cpp/.h
Refactoring - Remove Deprecated Functions

Removed calls to deprecated functions in previous commit. Some left in
ParallelMetropolis to do ASAP when Albert finishes work
Upgraded Demo Script for Arc Spike.
Merge branch 'master' of git://github.com/joshm1229/MCGPU