Appistry mutect SomaticIndelDetector support added.
Combining muTect SNPs and SID InDels correctly using combine_variants
Added splice junction read support
MuTect versioning for appistry and subsequent application of SomaticIndelDetector
bcbio/provenance/programs.py fixed for mutect version detection
Merge pull request #330 from mjafin/master

Support Appistry SomaticIndelDetector and bundle with calls to MuTect