Updates README file, and the current version is printed out to the stdout
Fixes gap bug
Fixes some optional fields and CIGAR codes
Updates SConstruct to include the paths C_INCLUDE_PATH and LIBRARY_PATH
Updates SConstruct to include the paths C_PATH and LD_LIBRARY_PATH
[BAM]Implement: Added empirical qualities to recalibration statistics
[BAM]Implement: Recalibration statistics info now contains reported quality versus empirical quality data
[BAM]Implement: Quality - cycle accuracy output
[BAM]Fix: Fixed duplicate check
[BAM]Minor change in aux_quality.c
[BAM]Implement: Added hardclip function for softclipped bases
[BAM]Fix: Fixed duplicate check
[BAM]Implement: Added hardclip function for softclipped bases
[BAM]Implement: Added scripts to check recalibration correlation
[BAM]Fixes: Corrected some bugs. Added duplicated filter to recalibration tool
[BAM]Implement: Recalibration code cleaning. Improved accuracy of recalibration
[BAM]Fix: Memory leaks correction