disable precalculation option for macroape ScanCollection; make use of common jar for all needs
default collections included, unpacking script with threshold precalculation and logo drawing included
fix unpack_collections to find jar in the same folder.
Gemfile fixed to use non-broken sequence_logo version. Readme has fixes about new name of java-tool and about convenient way to unpack collections
working version of macro-perfectos-ape included