Various changes precipitated by setup of production servers
Misc cleanups; rename api.opentreeoflife.org to phylesystem-api
A separate install-db command so oti can build on taxomachine db
Get OTI indexing to work and add phylesystem-api apache aliases
Tweak apache config
Push bot identity for both webapp and phylesystem-api
Merge pull request #297 from OpenTreeOfLife/prod-setup

Deployment enhancements for setting up new development server (ot11)