remove deploy-scripts rule and use rule from common
add support to determine file format from file extension
improve error reporting and add --show-error option
add -trim option to cbd-buildmatrix and cbd-buildmatrixlocal
add --show-times option to cbd-getmatrix
add min-reads and max-reads options to cbd-buildmatrix and cbd-buildmatrixlocal commands
add --extreme option to cbd-buildmatrix and cbd-buildmatrixlocal
add logging to server functions
remove unused variable
add better error reporting for shock errors
refactor Worker to be a better class
add --url option to cbd-buildmatrix, used standard config file in cbd-url
add dendrogram and mds plot types to cbd-plotmatrix
fix cbd-url test
log config values from constructor
add a way to control text labels on mds plots
improve error reporting when multiprocessing command fails
update help text, fix error message
fix error when using labels from input file but no colors
fix typos in usage help text