Sorry! corrected include extra_configs for upgrade and remove too

Completely forgot about the upgrade and remove sections of the zppy
client, fixed now so those extra config files can access the dryden
framework
Cleaned up the functions that I added before and added Remove Directory

If a file/folder doesn't exist (possibly from wrong parameters) -
execution will still continue :) and added RemoveDirectory so that you
don't have to remember to use rmdir($dir) after using
RemoveDirectoryContents
Fixed permissions on copied files
Fixed permissions on copy files.. using existing safe file copy
Fixed copied files permissions...
fixed copied folder permissions...
Merge remote-tracking branch 'upstream/master'
Update template.class.php

Spelling mistake 
ListAvaliableTemeplates should be ListAvaliableTemplates
Update controller.ext.php

There are a few spelling mistakes.

It says exectute instead of execute
Escaping all variables passed to system commands.
Escaping all variables passed to system commands.
Escaping all variables passed to system commands plus fixed ajax loading of files in users hostdata directory.
Core file changes and additions for the v10.1.0 Template changes
Fixed Domain stats
Fixed some issues with the Stat Bar graphs HTML output
Made account usage stats SMART to show warning color when usage is HIGH and hide percentage text when the bar is not big enough to show it
Added Bootstrap status badges to the Domain stats tab
New System message/notice class to utilize Bootstrap's amazing Alerts.  Drydens sysmessage class will handle the old class names as well as Bootstraps names and will link them all to use Bootstrap HTML and CSS
Added Modulelistjson.class.php which is used to generate a JSON object of all Modules a user is allowed to access for the Typeahead search box on the Frontend.  Also minor edit to module columns on homepage
Fixed some issue with the Breadcrumbs Category name URL generation