Modified samples with 0 index to get converted to fastq, Added WIP index stats for reads 2 or 3.
Using NumCycles from runinfo.xml to get index_size. This is problematic though
Added: Moving R2/R3 index files to Undetermined_indices, Rename second read if any to R2
Changed: Merged Undemultiplexed.metrics files will now be sorted to accomodate indices as reads
Updated .travis.yml to remove outdated --use-mirrors pip argument (caused Travis builds to fail)
Merge pull request #290 from remiolsen/single_sample_on_lane

Single sample on lane
Update .travis.yml to --allow-external when finding pysam
Merge pull request #292 from mariogiov/master

Update .travis.yml to --allow-external when finding pysam
Merge branch 'master' of https://github.com/SciLifeLab/bcbb