CONFIG debugging
CONFIG debugging
debugging
ADDED sam2bedgraph as replacement for bedtools genomecov (chokes on large bams)
TESTING
CONFIG added qxt test
DONE
Merge branch 'sam2bg' into molpath
ADDED task skipping basesd on file pattern matching
BUGFIX in variant recall (force printing of certain stats even if 0)
ADDED ignore QC option
BUGFIX cmdtrace
UPDATE argparse options (removed -d switch, use --debug instead)