pmd format was changed.
mkconf_python was added.
make_polycrystal.py was corrected.
old directory name was corrected in mkconf/ directory.
python script folder nappy was added. And get_msd.py was added in pmd/util/
now pmd/util/get_msd.py was added.
get_msd_staggered.py added and make_polycrystal.py corrected.