Merge pull request #1 from gentoo-science/master

Sync
Fixed calculix-ccx link to arpack
Merge pull request #263 from carldong/calculix-ccx

Fixed sci-lib/calculix-ccx arpack linking problem
sci-libs/calculix-cgx: Fixed document install and fixed freeglut-2.8.1
support
Merge pull request #262 from carldong/calculix-cgx

Fixed calculix-cgx document install
sci-mathematics/cadabra: add dependency on dev-texlive/texlive-latexextra
sci-mathematics/cadabra: version bump
fix completion install

Package-Manager: portage-2.2.8-r1
Fixing issue #264 and giving it a serious look over and clean. Enabled threading. More could be done.

Package-Manager: portage-2.2.10
sync with gx86

Package-Manager: portage-2.2.8-r1
www-apps/py-swish-e: masked because of masked dependency
sci-astronomy/casapy-bin: version bump to 4.2.2, remove old ebuilds

Package-Manager: portage-2.2.12
Merge pull request #265 from sargas/casa-4.2.2

casapy-bin version bump to 4.2.2
sci-biology/cutadapt: fix SRC_URI
sci-biology/cutadapt: version bump
Add src_unpack to ensure mercurial_src_unpack is called

The inheritance mechanism of ebuilds is such that functions not
overridden are taken from the last package inherited. In this case,
that is vcs-snapshot, which provides a src_unpack that does not clone
the mercurial repository. By explicitly providing src_unpack, we
guarantee that mercurial_src_unpack is called prior to
vcs-snapshot_src_unpack.
Merge pull request #266 from hazelnusse/eigen-9999-pr

dev-cpp/eigen: add src_unpack to ensure mercurial_src_unpack is called
travis.yml: make 'repoman full' verbose for output
drop sci-biology/jalview as dep <sci-chemistry/jmol-11.1 in missing
drop ~x86 as deps are missing

Package-Manager: portage-2.2.8-r1