Minor
Mingaps are now real numbers
No need for minlen, gene specific
Use min overlap for minlen
Major changes

— blast prop is 0.5, 0.99 was too strict
— simplified alignment check: ngaps not pgaps, this avoids specs in
large overhands problem
— blast tests for number of identities, this must just be bigger than
min overlap
— blast alignment now returns the first sequence that is successful,
saves time
— added a timeout cut out for mafft, successful alignments should take
less time. if an alignment takes 10x longer than expected this
execution will be halted, saves time
Log search term used

Have had unusual sequences downloaded, check search term used.
New function + minor edit

— Read in names for genes as list
— Created a time it function for calculating timeout
No need for minlen
Updated tests given updates