JonkerVolgenant WIP. A bare skeleton.

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
Release v2.2.0-rc4

Signed-off-by: Jean-Yves Tinevez <jeanyves.tinevez@gmail.com>
Merge branch 'master' of ssh://github.com/fiji/TrackMate
Merge branch 'master' of ssh://github.com/fiji/TrackMate
An importer for Fernando Amat TGMM tracking results.

WIP.
Signed-off-by: Jean-Yves Tinevez <jeanyves.tinevez@gmail.com>
A static util to ask for a folder.

Signed-off-by: Jean-Yves Tinevez <jeanyves.tinevez@gmail.com>
TGMM import: take a list of transforms.

Signed-off-by: Jean-Yves Tinevez <jeanyves.tinevez@gmail.com>
TGMMImporter: be more verbose.

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
State that we want Doubles and not Floats in display parameters.

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
Fix a bug in TGMM importer causing the wrong transform to be used.

We were using the transform at timepoint t when we should have used the
transform at timepoint frame[t].
Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
More of these double to floats cast problems.

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
TGMMImporter: extract a rough spot radius.

Tried to derive it from the precision matrix, but obviously it does not
work well. I am not sure I understand well how I should do.
Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
More float vs double problems.

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
Merge branch 'master' of ssh://github.com/fiji/TrackMate
Merge branch 'master' of ssh://github.com/fiji/TrackMate
More float vs double problems.

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
Merge branch 'fernando-import' of github.com:fiji/TrackMate into fernando-import
Embryonic action for the analysis of track branches.

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
ConvexBranchesDecomposition: add a utility to build branch graph.

And put some more javadocs.
Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
Exploit the layout in branches for "complicated" tracks.

Tracks that have merging points always were a mess to arrange in
TrackScheme. This makes it slightly better.
Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>