Plasma renaming program

Grand plasma rename:
Most if not all instances of plasma, the purple element/orange gas and its related things, have been renamed to phoron. I have so far hit:

plasma
Plasma
PLASMA
toxins

While I was at it I also hit toxins into science or rnd in some instances. These changes also extend into the code itself, not just the item names for consistency sake (sorry downstream servers). Due to the amount of changes I am expecting some broken icons though I did what I could to try and catch them all.

Due to the fact this also expands to a bit of map changes, I decided to push this while there's still some work to do (toxin, Toxin, Toxins still needs looked at)

*This PR is so these changes can be merged, tested further than what I can think of in local testing and any oversights, accidental changes or further mistakes discovered and fixed before I tackle the second half.*