fix some of wrong comparisons in MaudeKRun to fix a test
Merge pull request #961 from osa1/maudeKRun-fix

fix some of wrong comparisons in MaudeKRun to fix a test
split pom into distinct modules
rename files
rename files
modify files to make new directory layout work
rename file
fix copyright
fix copyright
relax copyright restrictions for file extensions not part of main code base
rename file