Created single set of execution flags (refs #3461)
Migrated output exec flags to new flags (refs #3461)
Migrate execute flags to new syntax
EXEC_RESIDUAL -> EXEC_LINEAR
EXEC_JACOBIAN -> EXEC_NONLINEAR
EXEC_TIMESTEP -> EXEC_TIMESTEP_END
(refs #3461)
Updated moose test input files for syntax change (refs #3461)
Updated modules for input file syntax change (refs #3461)
Adds support for deprecated flags and types, this allows MOOSE to be updated w/o an integration branch (refs #3461)
Adding --check-input command line option

Check the specified input file and return the result.

Closes #4437
Added TotalFreeEnergy auxkernel for #4413
Added 2 variable test for TotalFreeEnergy for #4413
Added TotalFreeEnergy to examples for #4413
Added missing gold file, a new error check, and updated input file syntax #4413
Fixed incorrect MultiMooseEnum values
(refs #3461)
Workaround for point locator misses
refs #4439
Update enum values for 'execute_on' options (refs #3461)
Merge pull request #4438 from andrsd/check-input

Adding --check-input command line option
Merge pull request #4440 from permcody/transfer_fix

Workaround for point locator misses
Merge pull request #4434 from aeslaughter/execute_on-3461

Update 'execute_on' syntax
Merge pull request #4433 from tonkmr/free_energy_auxkernel_4413

Added TotalFreeEnergy auxkernel for #4413
Fix deprecated messages
(refs #3847)
Update example input files
(refs #4419)