Raw data status filepath removal

Modifications to the raw data object:
 - Added a status to the raw data, to know when the files have been uploaded or they are being uploaded.
 - Added a function to remove all the filepaths associated from the RawData `clear_filepaths`
 - Added a function to remove a filepath from the RawData `remove_filepath`

Adds the needed bits for #548 
Why not just always queue? The divergence in execution below opens up the possibility of difficult to debug errors later