Fixed the missleading behaviour when -N 0 option is provided.
Made sure the --un works now with --no-unal option.
Fixed an error to the big index test script.
Added the first regression test.
Reverted by default to 1mm search.
Switched back 1mm by default and updated the documentation with the new --no-1mm-upfront
This fixes both 279 and 288. Regression test added.
clearer documentation for --no-1mm-upfront
This should reduce wrapper overhead in cases where —no-unal is specified but —un & friends are not
fixing mistake in measuring hash size
Merge branch 'bugs/296' of github.com:BenLangmead/bowtie2 into bugs/279
Merge branch 'bugs/279' of github.com:BenLangmead/bowtie2
Merge branch 'bugs/279'