for r65385: .maskedMsg() needs doc, even as internal

git-svn-id: https://svn.r-project.org/R/trunk@65399 00db46b3-68df-0310-9c12-caf00c1e9a41
R CMD Sweave must not delete files by default; buildVignette(*, keep);
 update (and fix/clarify) documentation; 
cosmetic (& speedup in buildVignettes())

git-svn-id: https://svn.r-project.org/R/trunk@65401 00db46b3-68df-0310-9c12-caf00c1e9a41
Rd syntax.

git-svn-id: https://svn.r-project.org/R/trunk@65402 00db46b3-68df-0310-9c12-caf00c1e9a41
bump BioC version to 3.0

git-svn-id: https://svn.r-project.org/R/trunk@65403 00db46b3-68df-0310-9c12-caf00c1e9a41
Fix under NAMED for vector index assignment bug reported by Scott Kostyshak.


git-svn-id: https://svn.r-project.org/R/trunk@65404 00db46b3-68df-0310-9c12-caf00c1e9a41
Fix under REFCNT for vector index assignment bug reported by Scott Kostyshak.


git-svn-id: https://svn.r-project.org/R/trunk@65406 00db46b3-68df-0310-9c12-caf00c1e9a41
add casts to avoid warnings on Windows

git-svn-id: https://svn.r-project.org/R/trunk@65408 00db46b3-68df-0310-9c12-caf00c1e9a41
New mirror in A Coruña, Spain.

git-svn-id: https://svn.r-project.org/R/trunk@65410 00db46b3-68df-0310-9c12-caf00c1e9a41
Correction.


git-svn-id: https://svn.r-project.org/R/trunk@65412 00db46b3-68df-0310-9c12-caf00c1e9a41
Note important warnings from re-building vignettes.

git-svn-id: https://svn.r-project.org/R/trunk@65413 00db46b3-68df-0310-9c12-caf00c1e9a41
update PCRE to 8.35

git-svn-id: https://svn.r-project.org/R/trunk@65414 00db46b3-68df-0310-9c12-caf00c1e9a41
tweak

git-svn-id: https://svn.r-project.org/R/trunk@65415 00db46b3-68df-0310-9c12-caf00c1e9a41
correct link

git-svn-id: https://svn.r-project.org/R/trunk@65416 00db46b3-68df-0310-9c12-caf00c1e9a41
update

git-svn-id: https://svn.r-project.org/R/trunk@65417 00db46b3-68df-0310-9c12-caf00c1e9a41
a few more details

git-svn-id: https://svn.r-project.org/R/trunk@65420 00db46b3-68df-0310-9c12-caf00c1e9a41
regexp is in fact used for paths

git-svn-id: https://svn.r-project.org/R/trunk@65423 00db46b3-68df-0310-9c12-caf00c1e9a41
Avoid duplicating freshly allocated intermediate LHS values.


git-svn-id: https://svn.r-project.org/R/trunk@65426 00db46b3-68df-0310-9c12-caf00c1e9a41
tweaks

git-svn-id: https://svn.r-project.org/R/trunk@65428 00db46b3-68df-0310-9c12-caf00c1e9a41
update

git-svn-id: https://svn.r-project.org/R/trunk@65430 00db46b3-68df-0310-9c12-caf00c1e9a41
backporting bug fixes  r65344-5, r65384 to '3.1.0 patched'


git-svn-id: https://svn.r-project.org/R/trunk@65433 00db46b3-68df-0310-9c12-caf00c1e9a41