WINDUP-379: Overwrite prompt is ignored in non-interactive mode, and results in automatic deletion of the output folder
WINDUP-369: Be able to focus effort on specific jars in the ear or war
WINDUP-369: Reporting of the ignored files
Merge pull request #348 from jsight/fix_for_overwrite_prompt

WINDUP-379: Overwrite prompt is ignored in non-interactive mode, and res...
Merge branch 'WINDUP-369' of https://github.com/mbriskar/windup into mbriskar-WINDUP-369
Tweaked javadoc, and made a minor change to model naming
Merge branch 'mbriskar-WINDUP-369'
[maven-release-plugin] prepare release 2.0.0.Beta5
[maven-release-plugin] prepare for next development iteration
WINDUP-346: Bootstrap to accept windup args directly
WINDUP-346: Added dynamic help and options (based on WindupConfigurationOption)
Merge pull request #350 from jsight/OndraZizka-BootstrapArgs-WINDUP-346

Ondra zizka bootstrap args windup 346
WINDUP-380: A little bit cleanup for groovy part
WINDUP-380: Add tests for the groovy part
Missing div, format
Merge pull request #353 from OndraZizka/TemplateFix

Missing div, format
Merge pull request #352 from mbriskar/WINDUP-380

Windup 380: Add tests for the groovy part
WINDUP-331: Fail gracefully on unreadable archive
Merge pull request #351 from mbriskar/WINDUP-331

WINDUP-331: Fail gracefully on unreadable archive
WINDUP-389: Variables is searching the stack in the wrong order (returning the bottom stack frame instead of the top one)