Include config.py from peasoup
Begin major refactor, moving parsing and class definitions to separate files
Add gene.py for Gene object, gene_coordinates
Add genomediff.py for GenomeDiff class and parsing
Add utils.py for basic general routines
Add boilerplate conf file
Add swap files to gitignore
Update all the things with refactored object-based storage and parsing, proc6 and proc4 using new system