Phylesystem now takes an arg for what the study prefix should be
typo fix and making method private
reading phylesystem new_study_prefix from a file (if there is a new_study_prefix file at the top of the data repo
Merge pull request #22 from OpenTreeOfLife/supp-file

Supp file
description of how to trigger unittests
Merge branch 'master' into testing-markdown
Merge pull request #34 from OpenTreeOfLife/cleanup

Cleanup
Merge pull request #35 from OpenTreeOfLife/cleanup

Cleanup
Merge pull request #33 from OpenTreeOfLife/configurable-prefix

Configurable prefix
Merge branch 'testing-markdown'
installation pointer in TESTING.md
Merge pull request #36 from OpenTreeOfLife/testing-markdown

Testing markdown
Adds bracket_ingroup option to newick writing

This used to be on by default, but the behavior
is being changed to address:
    https://github.com/OpenTreeOfLife/opentree/issues/490

test.sh moved to maintainer-test.sh so that the new
test.sh can follow the new open tree convention of having a
test.sh that installs and tests.
typo in docs and newline at EOF added
Merge pull request #39 from OpenTreeOfLife/opentree-issue-490

Opentree issue 490 'Newicks from curator app not parsable'
some expansion of the abstract
ignore
Making phylografter web service failures result in warning messages

...instead of test failures
support for a command-line tool for nexson/nexml conversion to newick
get_changed_studies method added