Reestructuration of data part.
Super commit (bad practice ahead!). The matrix handling part looks to be
refactored. Data handling part has been partially reestructured. Both
parts need to be tested in complete scenarios.
Structur erefactoring finished. Tests must be modified and some scenario
tests must be performed.
Minor change.
Some tests added, others changed place. Test source generator improved
(first depended on filesystem)
Data section finished. Now its time to forward changes to the rest of
the code!
Changing matrix generation to fit with data objects.
improving chainmapping
Workspace and data creation updated. Updating clustering exploration...
Analysis updated (not tested)
Full run working (except postprocessing). Timers not working in inner
classes.
Everything works again (or it looks like)
trying todo list
README changed
new attempt to get todo lists
Data::get_structure_ensemble changed to get_all_elements
More tests to proteindata added
Now remarks and model number are stored along with the data model
Redundancy elimination fixed. Representatives and cluster files are now
correctly created (with remarks)
mpi driver updated