nixos/graphite-service: fix startup issue

The preStart snippets (graphite, carbon) try to create directories under
/var/db/. That currently fails because the code is run as user
"graphite". Fix by setting "PermissionsStartOnly = true" so that the
preStart stuff is run as 'root'.

Further:
 * graphite-web-0.9.12/bin/build-index.sh needs perl, so add it to PATH.
 * Now that preStart runs as root, we must wait with "chown graphite"
   until we're done creating files/directories.
 * Drop needless check for root (uid 0) before running chown.
nixos/grahite-service: mkdir -m => mkdir && chmod

mkdir -m will only set the permissions if it *creates* the directory.
Existing directories, with possibly wrong permissions, will not be
updated.

Use explicit chmod so permissions will always be correct.
libmx: Add package
eigen: upgrading version to 3.2.1
libgnurl, a fork of libcurl used by GNUnet
gnunet: add libgnurl and GnuTLS as dependencies

libgnurl is essential for bootstrapping (needed to download a hostlist).
GnuTLS is needed by gnunet-gns-proxy.

Also sort dependencies alphabetically.
Ur/Web compiler: new release, 20130421 -> 20140426
add jmtpfs - a FUSE filesystem for MTP
use 0.5 archive of jmtpfs
Phabricator, a web application, snapshot of 2014-05-12
biosdevname: add package
chicken(-dev): Update to 4.8.0.5 / 4.9.0rc1
linux-3.12: Apply patch for CVE-2014-0196
Re-write the Haskell Platform out of haskell-defaults.nix.

 1) Packages formerly called haskell-haskell-platform-ghcXYZ-VVVV.X.Y.Z are
    now called haskell-platform-VVVV.X.Y.Z. The latest version can be
    installed by running "nix-env -i haskell-platform".

 2) The attributes haskellPackages_ghcXYZ.haskellPlatform no longer exist.
    Instead, we have attributes like haskellPlatformPackages."2012_4_0_0".
    (The last numeric bit must be quoted when used in a Nix file, but not on
    the command line to nix-env, nix-build, etc.) The latest Platform has a
    top-level alias called simply haskellPlatform.

 3) The haskellPackages_ghcXYZ package sets offer the latest version of every
    library that GHC x.y.z can compile. For example, if 2.7 is the latest
    version of QuickCheck and if GHC 7.0.4 can compile that version, then
    haskellPackages_ghc704.QuickCheck refers to version 2.7.

 4) All intermediate GHC releases were dropped from all-packages.nix to
    simplify our configuration. What remains is a haskellPackages_ghcXYZ set
    for the latest version of every major release branch, i.e. GHC 6.10.4,
    6.12.3, 7.0.4, 7.2.2, 7.4.2, 7.6.3, 7.8.2, and 7.9.x (HEAD snapshot).

 5) The ghcXYZPrefs functions in haskell-defaults.nix now inherit overrides
    from newer to older compilers, i.e. an override configured for GHC 7.0.4
    will automatically apply to GHC 6.12.3 and 6.10.4, too. This change has
    reduced the redundancy in those configuration functions. The downside is
    that overriding an attribute for only one particular GHC version has become
    more difficult. In practice, this case doesn't occur much, though.

 6) The 'cabal' builder has a brand-new argument called 'extension'. That
    function is "self : super : {}" by default and users can override it to
    mess with the attribute set passed to cabal.mkDerivation. An example use
    would be the definition of darcs in all-packages.nix:

    | darcs = haskellPackages.darcs.override {
    |   cabal = haskellPackages.cabal.override {
    |     extension = self : super : {
    |       isLibrary = false;
    |       configureFlags = "-f-library " + super.configureFlags or "";
    |     };
    |   };
    | };

    In this case, extension disables building the library part of the package
    to give us an executable-only version that has no dependencies on GHC or
    any other Haskell packages.

    The 'self' argument refers to the final version of the attribute set and
    'super' refers to the original attribute set.

Note that ...

 - Haskell Platform packages always provide the Haddock binary that came with
   the compiler.

 - Haskell Platform 2009.2.0.2 is broken because of build failures in cgi and
   cabal-install.

 - Haskell Platform 2010.1.0.0 is broken becasue of build failures in cgi.
haskell-packages.nix: remove references to parsec2
haskell-wxcore: jailbreak to fix build with recent versions of array
haskell-ConfigFile: update to version 1.1.2
haskell-Glob: update to version 0.7.5
haskell-RepLib: update to version 0.5.3.3
haskell-data-lens: update to version 2.10.5