Renamed functions in HartreeFockSolver to reflect matrix names
Added symmetries in coupledMatrix for 3x speedup
Added a few clearifying comments
Added value checks for system tests
Writing energies to HDF5 file for different configurations
Reorganized project structure and cleaned up compile warnings
Changed naming from configuration to state in staterunner
Added data files
Added MPI parallelization to staterunner.pro
Added missing GaussianTypeOrbitalIntegrator
Removed GaussianTypeOrbitalIntegrator
Cleaned out references to missing Gaussian files
Cleaned out even more dead includes
Changed to using namespace boost. Writing multiple files for processors.
Removed crazy statement leading to insanely bad values for H2
Cleaned up tests and added support for 6-311G for hydrogen in
staterunner
Added mixing of new and old density matrix
Fixed test values. Throwing in staterunner.

Test values updated to use solver.solve()
Error on number of atoms in staterunner throwing instead of exiting.
Restructured file reading in staterunner.pro, renamed basis files
Updated tests to use new basis files