Read output streams before calling WaitForExit() to avoid a deadlock for packages with many dependencies.

For packages with many dependencies the output stream from calling NuGet.exe in functions/Run-NuGet can be filled and cause a deadlock [as described on MSDN][1].

Moving the call to WaitForExit() to after the output streams have been read solves this problem.

[1]: http://msdn.microsoft.com/en-us/library/system.diagnostics.processstartinfo.redirectstandardoutput.aspx
Yeah, I had a look at that earlier - in the absence of any faster ways of doing it I've got an implementation based on that almost ready - I'll push it up tomorrow.