Chaning hdf5 tables to new file representation
adding from_tsv
Merge branch 'master' of https://github.com/biocore/biom-format into issue289
ENH: :cry:
ENH: :cry:
ENH:moved parse_classic_table_to_rich to Table.from_tsv
TST: checking output format
Merge branch 'master' of github.com:biocore/biom-format into issue_367

Conflicts:
	biom/interfaces/optparse/output_handler.py
added tests and numpy docstring
Merge branch 'master' of https://github.com/biocore/biom-format into issue289
add to_tsv and test
DOC: for from_hdf5 and to_hdf5
Adding from_hdf5_subset
Merge branch 'master' of git://github.com/biom-format/biom-format into hdf5_subset
DOC: fixed dataset sizes
Merging from_hdf5 and from_hdf5_subset
Adding documentation
address comments form @wasade
DOC: Update docs to 2.0 and scipy 0.13.0

Fixes #383
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