Merge pull request #27 from carlacummins/master

V2 ready for deployment
Merge pull request #28 from carlacummins/master

Correct pointer to config files
Merge pull request #29 from carlacummins/master

Correct pointer to config files
Merge pull request #30 from carlacummins/master

Updates to handle brackets in study name
Merge pull request #31 from carlacummins/master

v3 ready for deployment
create the irods command for getting pacbio data
initial lookup of irods location for pacbio
test irodsfind study and species
add new line to end of test output
Merge pull request #32 from andrewjpage/irodsfind

Irodsfind
search production databases first
push specified databases to array
use equals for file lane accession lookup
only add accession lookup if the names in the file start with a letter
use find file rule and don't check for file existence a second time
follow symlinks when finding
check for alt types
check for file existence first, more efficient
don't search for old assembly with reference files by default
perl tidy on filters file