Dirk's first commit
removed the 'old' .fq.gz.md5 extension (changed it into fq.md5)
put back
increased the number of cores/nodes requested for protocols
.
Merge pull request #140 from RoanKanninga/master

increased the number of cores/nodes requested for protocols
changed some protocols (deleted unused tmpfolders), added complete protocols: IndelMerge,MergeChrAndSplitVariants,MergeIndelCalls,Pindel. SnpEff protocols is WIP
Merge pull request #141 from RoanKanninga/master

changed some protocols (deleted unused tmpfolders), added complete proto...
Merge pull request #142 from Gerbenvandervries/master

first protocols for RNA pipeline
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines

Regular merge with blessed master.
Functioning pipeline version 0.1 for utrecht data (.bam files).
Merge pull request #143 from dirkdeweerd/master

Functioning pipeline version 0.1 for utrecht data (.bam files).
added fastqc and copy results protocols