New formula: SimpleITK

Closes #1303.
SISL 4.6.0 (new formula)

SISL is a NURBS (Non Uniform Rational B-Splines) software library developed and
maintained by the geometry modelling group at SINTEF ICT, Department of Applied
Mathematics.

Closes #1271.
Numdiff 5.8.1 (new formula)

A program that compares putatively similar files line by line and
field by field, ignoring small numeric differences or/and different
numeric formats.

Closes #1372.
nexusformat: version 4.3.3

Closes #1366.
kat 1.0.6: Add bioinformatics tag
repeatscout 1.0.5: Add optional dependency on trf

To filter your repeat library to remove low-complexity and tandem sequences,
you will neeed to have perl 5.5 (or better; see http://www.perl.com), nseg
(Wooton and Federhen, 1993; see ftp://ftp.ncbi.nih.gov/pub/seg/nseg) and trf
(Benson, 1999; see http://tandem.bu.edu/trf/trf.html).

See http://bix.ucsd.edu/repeatscout/README.txt
See #1338
Sally 0.9.2: New release

This release fixes a severe bug in the computation of blended n-grams.

Closes #1375.
New Formula: Dynare 4.4.3

Dynare is a software platform for handling a wide class of economic
models, in particular dynamic stochastic general equilibrium (DSGE) and
overlapping generations (OLG) models. The models solved by Dynare
include those relying on the rational expectations hypothesis, wherein
agents form their expectations about the future in a way consistent with
the model. But Dynare is also able to handle models where expectations
are formed differently: on one extreme, models where agents perfectly
anticipate the future; on the other extreme, models where agents have
limited rationality or imperfect knowledge of the state of  the economy
and, hence, form their expectations through a learning process. In terms
of types of agents, models solved  by Dynare can incorporate consumers,
productive firms, governments, monetary authorities,  investors and
financial intermediaries. Some degree of heterogeneity can be achieved
by including several distinct classes of agents in each of the
aforementioned agent categories.

Closes #1106.
mfusg (new formula)

Closes #1230.
vtk5: update options
vtk: update options
nexusformat: add make check

Closes #1379.
blast 2.2.30

Builds with current gcc v4.9.2

Closes #1381.
blast: add mirror
moab: update sha1
augustus 3.0.1: Add DOI and tag
ASL: version 20141111.

Fixes #1392.
htsbox r266: New formula
blast 2.2.30: Fix /usr/bin/basename: No such file

Closes #1396
phylip: add doi & tag