Merge branch 'trunk' of https://github.com/the-virtual-brain/tvb-library into trunk

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6615 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Simplify call of TvbProfile.set_profile()

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6616 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1589
Do not disable existing loggers when loading tvb configuration of logging.
Enable console logs in library profile.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6619 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Push some methods one level down in TvbProfile.env.***

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6620 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Push some methods one level down in TvbProfile.env.***

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6621 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Coupling: Add documentation about the convention used to obtain the delayed coupling activity (important in the case od directed matrices), and consistently change the dimension over which the sum is done.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6622 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1597
Rewrite TvbProfile (and the old TvbSettings).

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6624 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Enable back setting-service tests.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6626 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1597
Get rid of parameter try_reload.
Move parts which are related to initial-setup into initialize_profile() to avoid duplicate and possible future error from forgetting to call these.


git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6629 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Fix more rst warnings.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6632 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1597
Fix in VersionSettings.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6636 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1597
Avoid TEMP file already created in tests.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6638 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1597
Remove not necessary overwrite of CURRENT_DIR setting.
Fix one burst test.
Update simulator params from tests.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6645 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1597
Review SettingsProfile classes hierarchy:
- env.is_deployment doesn't need to be passed from outside, but the application knows that automatically.
- allow LIBRARY_PROFILE to be correctly set even in deployment mode
- refactor python modules for better clarity.
- temporarily disable TRADE_CRASH_SAFETY_FOR_SPEED to benchmark

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6668 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Merge branch 'trunk' of https://github.com/the-virtual-brain/tvb-library into trunk