refactoring rules
working on refactor and rule additions
fixes and portions of a journal scheme
fixed the painful extra require in rake pry and console, and everything
implemented several more rules for scheme1
more rules added
finished up scheme 1 and renamed tamil rules
adding scheme 2 rules
more rules from scheme 2 of the JASMS paper
finished scheme2 and modified the base code some to account for altered masses of original molecule
finished jasms 2002 reference schemes
fixes to analysis bugs
fixes for mol_wt usage
updates on gitignore
fixes and checks for adduct mass behaviors
mzml writing errors
added new file beginning the analysis of comparing experimental data to Msplinter generated spectra
added normalization
functional andromeda implementation, I believe
fixes and a complete workflow, mzML generated by msplinter and comparison tools on the side