minor change to IlluminaHiseqSequenceRunProcessor.getSampleSheet() so that a controlLibrary is NOT added to sample sheet (unless it is the lone library on the lane, and if that is the case, the code will not care that the control library lacks an adaptor
added debug statement related to last commit
fixed error in sampleService.isControlLibrary(Sample). Inadvertantly used sampleType rather than sampleSubType
fixed error in IlluminaHiseqSequenceRunProcessor.getSampleSheet(). Needed to mark cell as true if it ONLY contains a control.
in IlluminaHiseqSequenceRunProcessor.getSampleSheet(), moved cellMarked[cellid-1] = false; above the for (SampleSource cellLibrary : all) {.
Merge branch 'develop' of http://frankfurt.aecom.yu.edu/git/wasp/blessedRepository into develop
Merge branch 'develop' into qcChipSeqFlow
work in progress
Merge branch 'develop' into improveBatchViewer
illumina dep
working picard
resolving stash
started working on browser display for macs data, but not yet done
Merge branch 'develop' of http://frankfurt.aecom.yu.edu/git/wasp/blessedRepository into develop
Merge branch 'develop' into qcChipSeqFlow
added output to PeakCallerTasklet
trivial
Merge branch 'develop' of http://frankfurt.aecom.yu.edu/git/wasp/blessedRepository into develop
Merge branch 'develop' into qcChipSeqFlow
fixed display of lane number on task.aggregateAnalysis and task.cdllLibraryQC