Fix $app connection in Register Method

Register method failed to get a copy of the Application for all uses.
Task:MediaCore Including a new file to keep corejs media file changes, and including it and its dependencies in behavior.php TODO: Implement jQuery version in that file
Task:Core implementing mootools dependency removed core.js as a new file core-jquery-uncompressed.js
Modified functions: Joomla.renderMessages, Joomla.removeMessages
Task:Core Removed new JS file for the jQuery version of core.js and replacing the core-uncompressed.js with jQuery version, Fixing "Joomla" object not found error
Task:Core Including the compressed version of core.js and improving js code style
Task:Core Adding new line ending and convert to unix line delimiters
Task:Core Fix issue with invalid characters in validation message
Update brochure sample data.
Update testing sample data.
Update testing sample data.
Some more cleanup of ids
[#32498] 3.2RC - Bootstrap CSS styles loaded from (media/JUI/) for logged in users on front-end. (Fix #2393)
Update SQL Server sample data, remove unneeded template styles lines in MySQL sample data
[#32508] Widen the permissions dropdown (Fix #2404)
[#32480] ConfigModelForm and ConfigModelApplication use non existing setError() methods (Fix #2394)
 $ Adding updated installation language file cbk-IQ
typo
Missing plugin in [#32496]
[#32511] *B/C: Hathor edit contact or newsfeed broken on legacy sites (Fix #2405)
[#32514] New menu item > Articles > Single Article: search article doesn't work (Fix #2407)