making it so that the gtupload and gtdownload are using the wrapper modules that I am creating
I think this is correct - still testing.
Update dkfz workflow
Update bundle workflow.
Also try a merge. There were several conflicts because of tab/format/indentation changes!
Hopefully everything is back to normal.

Merge branch 'develop' of https://github.com/SeqWare/public-workflows into develop

Conflicts:
	workflow-DKFZ-bundle/src/main/java/io/seqware/pancancer/DKFZBundleWorkflow.java
Add changes to workflow ini.
Disable telomere extraction and enable the new dependency url
The $file variable is a folder that exists when the download is complete

This still needs to be tested more to prove to our selves that the logic is correct
Add new dependency url
Update workflow ini for dkfz workflow.
Fixed small typo causing incorrect bai file name
Merge remote-tracking branch 'origin/feature/ajw-gnos-wrapper' into feature/ajw-gnos-wrapper
Merge pull request #27 from SeqWare/feature/ajw-gnos-wrapper

Feature/ajw gnos wrapper
Merge branch 'release/2.6.5'
Merge tag '2.6.5' into develop

Creating workflow 2.6.5
Updating the URL for the bundle
Adding in new param
Merge remote-tracking branch 'origin/feature/vcf_decider' into feature/vcf_decider
fixed whitelist cut 'n paste artifact