check for empty
working on mapping distances now
Reproduces previous insert size distribution
MAXPAIRS added
documentation, usage, cleanup
updated script
fixed extraneous dollar sign
cleanup your mess
fixed output format
will over-write now.  Checks for EOF of input.  Read name search removed
clean up of script
added common.cc/.hpp
0.1.4 ready, I think
comments on ulimit
future dependencies
skip BAM file if already there
more doc details