improvements to efficiency of perl code
Updated ignores to include c/bin
c classes etc added. More efficient c implementation of allele counting
modified caveman target to counter target
Tests added for bam_access
Moved a couple of variable declarations to reduce warnings. Updated indel to is_del in stamtools pileup checks
Added test data for c testing purposes
Updated LICENSE
Updated LICENSE
Fixed pileup->indel issue

Changed to use the correct pileup->is_del
Modified memory allocation to allow for the size of genomes and larger numbers
Modified memory allocation to allow for the size of genomes and larger numbers
Made memory allocation dynamic in region setting to allow for the size of genomes and larger numbers
Update to version 1.2.0 for release with C code
script for versioning and version changed 1.2.0
Merge branch 'dev' of https://github.com/cancerit/alleleCount into dev
Merge pull request #4 from cancerit/dev

Pull C alleleCounter code and improvements to perl efficiency