adding get data script
adding dana farber immunology competition data/test script
add mhc 2 binding scorer
fix get-data.sh for iedb
Merge branch 'master' of github:hammerlab/immuno
adding pipeline2, which supports generating epitopes from MAF files (and nothing else at the moment)
tabs to spaces
support multiple maf files in maf_to_epitopes, output to csv, formatting fixes
tcga maf file processing
Update README.md
update iedb
added min_count to assay results
extra prints
added mhc vs tcell csv
added csv against allele
added key by allele to iedb loaders
added generate_self_epitopes.py for generating unmutated possible epitopes from one or more proteome fasta files
fix formatting
added hexbin notebook
Merge branch 'master' of github.com:hammerlab/immuno