En route for v0.13.0

Signed-off-by: Jean-Yves Tinevez <jeanyves.tinevez@gmail.com>
Refactor loading/launching.

Loading and launching logics have been moved out of the MaMuT class to
plugin classes.
Now the MaMuT class just loads the image data and receive a blank or
configured model and settings from an external caller.
Signed-off-by: Jean-Yves Tinevez <jeanyves.tinevez@gmail.com>
Entry-point to load TGMM results in MaMuT.

At the present time, depends on the specific fernando-import branch of
TrackMate.
Signed-off-by: Jean-Yves Tinevez <jeanyves.tinevez@gmail.com>
When importing TGMM data, also loads transforms to put the back in global coordinates.

Signed-off-by: Jean-Yves Tinevez <jeanyves.tinevez@gmail.com>
WIP: put the manual transformation editor in MaMuT.

Does not work yet.
Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
Use doubles from display parameters.

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
More of these double to float cast problems.

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
Make plugin classes usable in a script more easily.

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
change of BDV format to spimdata
bugfix: wrong file returned from askForTGMMFolder()
Depend on TrackMate v2.5.0-SNAPSHOT for now.

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
Fix missing icons.

We copied some of the TrackMate icons to MaMuT to loosen a bit the two
projects.
Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
Do not crash when semi-auto tracking missing data.

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
Merge remote-tracking branch 'origin/tgmm-import'
Clean after merge.

Signed-off-by: Jean-Yves Tinevez <jean-yves.tinevez@pasteur.fr>
Import Base64 class from Robert Harder in the project.

Quoted:

I am placing this code in the Public Domain. Do with it as you will.
This software comes with no guarantees or warranties but with plenty of
well-wishing instead! Please visit http://iharder.net/base64
periodically to check for updates or to contribute improvements.

Version:
2.3.7
Author:
Robert Harder
rob@iharder.net