Removed unecessary theme files
Moved content sensitive functions into their own plugins

It is better for portability and maintenance in the future
Made page parent metabox visible again
Added front-end assets and loaded scripts
Made homepage work in wordpress (except references)
Added template files for press and references pages
Fixed color loading bugs in a few places
Loaded menu from wp
Loaded intro text data from wp
Added support for references grid listing (home and reference pages)
Removed easy image gallery additional js