for some reason bwa made a BAM file with a start pos == -1. That's not right... so, we'll ignore those.
Merge branch 'working' of ssh://github.com/ngsutils/ngsutils into working
chunk 1M reads at a time, this will reduce the number of temp files 10X
Merge branch 'working' of ssh://github.com/ngsutils/ngsutils into working
Merge branch 'working' of ssh://github.com/ngsutils/ngsutils into working
Merge branch 'working' of ssh://github.com/ngsutils/ngsutils into working
Merge branch 'working' of ssh://github.com/ngsutils/ngsutils into working
updated read_to_unmapped to return a valid record