Added cmake build system. Some modules are not added yet
Now this almost builds on Windows
Fixed some 'I don't know how it worked' bugs
Merge pull request #31 from stevens-crag/CMake

Added config files or CMake
experiments file
graphviz and html experiment outputs
experiment updates
processing scripts
csv file writer
massive refactoring, command line arguments, script to parse files
exp adjustments
fix of complitation after removing template parameter from EndomorphismSLP
collisions experiment
changed output, minor corrections
extra logging, reformating
free reduction collision test
collision check using lengths
inc update